Advanced user settings – PhyloSift Run Control file

Advanced users may want to alter the default parameters and search values executed in the PhyloSift pipeline. We’ve added support for a PhyloSift Run Control input file (the phylosiftrc file, which comes packed in the home directory of the PhyloSift download). This file is for advanced users wanting to change the specific settings for different programs packaged within PhyloSift (HMMer, LAST, etc), or for system administrators overseeing a single shared copy of PhyloSift and its reference databases. To use the RC file, specify the command line flag –config=<file>

Further details can be found here:

PhyloSift Run Control File – Instructions